Cite Us: Xu, Q., Liu, Y., Sun, D., Huang, X., Li, F., Zhai, J., ... & Niu, B. (2023). OncoCTMiner: streamlining precision oncology trial matching via molecular profile analysis. Database, 2023, baad077.
Links: DATABASE, PubMed (PMID:37935585)
  • Matching
  • Job List
* Step 1. Upload genetic test result (SNV/Indel)
  • Alteration List
  • Result File

Note: Paste your alteration list (SNV/Indel).

Click upload or drag the file here

Render after successful upload

Note: Upload your test result file, only files in '.vcf' format are supported.

Note: Please select reference genome version.

Step 2. Other biomarks testing results

Note: Please select MMR typing result.

Note: Please select MSI typing result.

Note: Please select TMB typing result.

  • WT
  • ANY
  • DUP
  • DEL
  • RAM
  • OEXP
  • EXP
  • UEXP
  • NEXP
  • DMET
  • HMET
  • EGP
  • CGB

Note: Please input wild-type gene list (if any).

Note: Please input alterated gene list (any type).

Note: Please input duplicated gene (copy number amplification) list (if any).

Note: Please input deleted gene (copy number deletion) list (if any).

Note: Please input fusion gene list (if any, either main gene <eg. 'ALK'> or fusion gene <eg. 'EML4-ALK'> is accepted).

Note: Please input over-expressed gene list (if any).

Note: Please input normal-expressed (positive) gene list (if any).

Note: Please input under-expressed gene list (if any).

Note: Please input not-expressed (negative) gene list (if any).

Note: Please input promoter demethylation gene list (if any).

Note: Please input promoter hypermethylation gene list (if any).

Note: Please input epigenetic phosphorylation gene list (if any).

Note: Please input cytogenetic biomarkers list (if any).

* Step 3. Select cancer type

Note: Select cancer types.

Step 4. Optional Setting

Note: A suitable job name will assist you in better distinguishing distinct jobs.

Note: Please select match type: umbrella set cancer as first condition, basket set alteration as first condition.

Note: Please select the drugs/chemicals that needed to be included in the clinical trials.

Note: Please select the drugs/chemicals that have been treated with and needed to be excluded from the clinical trials.

Note: Please select the therapies that needed to be included in the clinical trials.

Note: Please select the therapies that have been treated with and needed to be excluded from the clinical trials.

Note: Please select the overall status of clinical trials.

Note: Please select the phase of clinical trials.

Note: Please select the age group of recruiting.

Note: Please select the gender of recruiting.

Note: Please select the locations of clinical trials.

Note: Please set the max trial count returned by the matching job under each trial groups (positive, negative, unclassified).

Step 5. Submit your job